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### Describe the problem
An error occurs when using the compute_visualization method from the FiftyOne brain plugin in the app. This issue arises specifically when the view in the app is set to "pa…
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Hi all, when running `openwebtext_trainer.py` with default settings, the program crashes after 6k steps with following message:
```
(.venv) slkv@slkv-pc:~/Projects/project_brain$ python ./src/pret…
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[Brain Imaging Data Structure (BIDS)](https://docs.google.com/document/d/1HFUkAEE-pB-angVcYe6pf_-fVf4sCpOHKesUvfb8Grc/edit#) is a new specification describing how a neuroimaging dataset should be orga…
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I've tried running `mainfunction` provided in the example code on two different mgz files:
the first one is from my dataset, the second file is the standard sample file that comes with freesurfer sof…
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Run foundation data import pipeline for MSK brain tumor patients. Data can be found in:
dashi-dev:/data/cbio-portal-data/foundation
Original data should be move to:
cbio-portal-data (repos) /MELLING…
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[BrainTrawler](https://braintrawler.vrvis.at/) provides a way for users to query public brain data registered to an atlas. It would be great to find a way to do things like:
- Query/visualise data fr…
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Hello,
Thank you for a great repo and paper!
We noticed that for Vizgen aspect, creating of polygons (Line 140 - 152: preprocess/vizgen.py) uses the old cell boundaries h5 format. However, we h…
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Hello,
Thank you for the amazing tool. It works really good. I have 2 particular questions.
I have 2 big datasets, primary lung adenocarcinoma tumor and brain metastasis of lung adenocarcinoma.
Th…
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i want to know details in this file
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Quite often projects do not adopt BIDS due to complexity or not perfect fit, and then establish new a file layout and/or metadata convention/standard while saying they are "BIDS-like". **The likeness…