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Hello! Sorry for all of my many questions
I was able to get a count for a single one of my 16 fastq files using VIRTUS.PE.cwl, but had to use cwltool --singularity to run it, and if I attempted to …
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How should biomarker scores. Begin to look into algorithm based on publications, FDA approval, EHR, etc
Look at example in IDG. Discuss with Jeremy
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:red_circle: **Project Title** : Lung Cancer Detection Using CT Scans
:red_circle: **Aim** : To develop a machine learning model for detecting lung nodules indicative of lung cancer from CT scan im…
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We are currently working on a retrospective oncology research project with several hospitals in Europe. In an initial phase, all the information filled in eCRFs will be saved within each hospital usin…
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This publication was curated some time ago, and split into 4 studies because associations were only reported in the paper for these 4 studies. However, summary statistics were later obtained manually …
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In preparation for BSWH launch in June, we will need to add BSWH to all metric reports that are run including the weekly Operations Report, Biospecimen Report, Survey reports, monthly Duplicates Repor…
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Some examples here: https://arax.ncats.io/beta/?r=36527
example edge attribute list containing the attribute of interest:
```
--
attribute_type_id: | biolink:aggregator_knowledge_source
value_t…
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Issue by @MaxUlysse, moved from SciLifeLab#666
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CN…
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1. mds_tokyo_2011
https://cbioportal.mskcc.org/study.do?cancer_study_id=mds_tokyo_2011#summary
2. lcll_icgc_2011
https://cbioportal.mskcc.org/study.do?cancer_study_id=lcll_icgc_2011#summary
3. a…
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[A current cross-study url](http://www.cbioportal.org/index.do?cancer_study_id=all&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&data_priority=0&case_set_id=all&gene_list=EGFR%2520TP53&geneset_list=%…
jjgao updated
3 years ago