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Hi, I am having issues with FalconHiFi
Falcon was installed as : https://github.com/PacificBiosciences/pb-assembly
conda create -n pb-assembly
source activate pb-assembly
conda install pb-assemb…
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I'm trying to improve https://github.com/ndarilek/napibindings and to use it from other code. Unfortunately, running `nimble install` from within this package only installs the napibuild binary. It do…
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hi , I ran the falcon and met an error. could you give me some advises, thank you very much !
**the log**
```py
ffalcon-kit 1.8.1 (pip thinks "falcon-kit 1.8.1")
pypeflow 2.3.0
[INFO]Setup loggin…
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I am trying to run Falcon assembly on "local". I have a .cfg file with reference to https://github.com/PacificBiosciences/pbassembly/blob/master/cfgs/fc_run_mosquito.cfg for certain parameters. Howeve…
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I'm trying to run fc_run using HIFI pacbio data. I set input_type=preads, so I skip the 1-rawreads step, but when is running the second step 2-preads_oval, we are getting the following errors:
…
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I posted this under a similar post, but this was closed and was due to a missing .fai file which does not seem to be the issue here.
https://github.com/PacificBiosciences/pbbioconda/issues/223
I…
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Hi,
I am trying to use FALCON to run something similar to HGAP for **RSII data** (since the version of SMRT Link that I have access to is version 8.0, and not compatible with RS II subreads).
I …
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**Operating system**
SLUR based cluster
**Package name**
Falcon3
**Issue**
I'm trying to upgrade all my pipelines from the old pwatcher-based version to the new hosted on bioconda, mostly for…
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Hi,
I just wanted to show a comparison using simulated PacBio CLR reads corrected with Illumina reads versus simulated HiFi reads for a Drosophila melanogaster genome assembly (haploid assembly "co…
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Hi all,
I am running FALCON on a cluster with slurm and have come into a few errors when trying to submit the `fc_run.sh` script and let the assembly go. I will briefly describe the first, as it ma…