-
> By the way, allele_specific_modification.py does something very similar to differential_modification.py, only focussing on a simpler case of a 1 vs 1 comparison. The same improvements can probably b…
-
Hello,
Thank you for developing and maintaining such a useful package. I’m currently running a differentially accessible region analysis using the FindMarkers function from the Seurat package. My c…
-
Hi, thanks for developing and maintaining this amazing tool for differential analysis of microbiome data. I've read in several papers that ALDEX2 is a good choice for differential analysis of microbio…
-
Hi,
When running test_diff the order of factors/covariates in the design matrix affects the final analysis.
I have put this issue up on BioStars: https://www.biostars.org/p/9588610/#9602501 and …
-
**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
**PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW
COMMENT**
# General Notes
This repository serves as a mostly automated p…
-
Thank you for your great package to analysis differential translation events on ribo-seq data. I am using your package to analysis my own data,but my rnaseq and riboseq data do not have replicates,how…
-
**Describe the bug**
sur un dataset à 11 conditions il y a plusieurs bug
quand on arrive à Differential Analysis (après une quanti one versus one) --> subscript out of bounds
![image](https://gith…
-
Hello,
I've been using the differential transcript expression analysis well, until recently I've been trying with a different dataset and I keep getting an error "names" attribute[2] must be the s…
-
I know there has been a thread about this in the past: https://github.com/trinityrnaseq/trinityrnaseq/issues/1231
but there seems to me to be an issue that isn't clearly resolved or explained.
We …
-
- [ ] ATAC
- Work in progress: https://github.com/openpipelines-bio/openpipeline/issues/398
- [ ] CCC analysis
- Robrecht lift over from Open Problems?
- [ ] DE analysis
- [ ] Gene signatures…