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Users find our tool tips confusing. Please change the following:
- [ ] Speed up hover over by a couple hundred milliseconds (run changes by harley)
- [ ] Change lasso tool hover over from “Select” to…
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when I tried to find differential expressed genes and TEs for different cell clusters using expression matrix containing both genes and TEs, I noticed that I got less differential expressed genes com…
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Testing for differential expression/accessibility is embarrassingly parallel, and could use all available cores by default.
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`stepwise_regression` selects a model and passes it to generate top ranked differential expression gene lists.
There are cases where covariates are not independent and therefore, need to be exclud…
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Hi. I have used NATMI on a single cell RNA sequencing dataset to perform a differential cell communication analysis between a data set in two conditions and one of the files that is output is "DOWN-re…
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[20200301-M_liver1VSM_liver3_Gene_differential_expression.xlsx](https://github.com/evaleiyuhang/practice/files/8935873/20200301-M_liver1VSM_liver3_Gene_differential_expression.xlsx)
[20220619 ma plot…
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The formula to convert coef from log_eFC to log_2FC is not equal to coef/log_e(FC).
Let x be the fold change -> coef = log_e(x) -> e^(coef) = x -> coef.log_2(e) = log_2(x)
-> coef := coef.log_2(e…
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[Re-written by @pablo-gar]
## Context
Census launched in 2023 with its baseline functionality for efficient data access to the largest aggregation of standardized single-cell data, providing a stabl…
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### Steps To Reproduce
In SageMath 10.3 or 10.4, run
```
W = DifferentialWeylAlgebra(PolynomialRing(SR,['t']))
D = list(W.differentials())
matrix(W,[D[0]])
```
or
```
W = DifferentialWe…