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https://mp.weixin.qq.com/s/OxrJxDaLKQhxMzpuZkqn9A
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Dear authors,
I am very excited to use this wonderful tool, however, I am confused about the outputs of my data.
I'm using H3K27ac HiChIP and ATAC data for ABC analysis. Since I substituted the H3…
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I have curated multi-gene displays for all datasets in the following profiles (very few have issues and I am keeping track of them and will create tickets later):
- Adult
- Aging
- Central auditory…
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Hi, I just report problematic named entities I found using `en_core_sci_sm`, to improve the model. Most of them contain unbalanced brackets.
```
(-2)-0-(+2
(-8
(= control values
(= controls
(=…
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Add support to run ollama models in this tool. There should be a command line flag --ollama_models that takes one or more comma delimited parameters of format `:` and the prompt should include the fol…
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HI,
Thanks for this tools. I would like to inquire about how to further understand the TF Motif information related to the SNP I submitted. For example, I submitted the SNP rs10409243, the result s…
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Hi,
I have the following error when running ABC with my own dataset and danio rerio genome.
I've looked at issues with similar error but I think they are different.
Can you please help me on ho…
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Hi,
Thank you for providing us such a nice function.
I tried to download Hi-C data following your guidance, described in "Pipeline to Download Hi-C data"
Code I used is below,
#Download hic matr…
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Hi,
I used ABC model indentifiy the Candidate enhancer regions and i found that some region locate in promoter region.
like this
```
chr13 190285380 190287621 chr13 190285380 …
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I am trying to remove INFO/ID columns from a vcf file (part of the header can be seen below).
```
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
…