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immunogenomics
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SCENT
Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
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how to create custome bed file for gene-peak pair list
#14
GGboy-Zzz
opened
1 week ago
0
where can I get the example file in the small test set?
#13
jhylwq123
opened
2 weeks ago
0
How to predict gene expression after training the model?
#12
lzj1769
opened
2 weeks ago
0
Is it possible to use SCENT for Bulk RNAseq data?
#11
cparsania
closed
3 weeks ago
1
Version bump
#10
mfansler
closed
1 month ago
1
lmm_Dev
#9
jgockley62
closed
1 month ago
0
Assumes all genes in GeneBody bed file are present in scRNA count matrix.
#8
pazpark
closed
1 month ago
1
should we predict peak-gene pairs across all cells? Not restricted to a specific cell type?
#7
YichaoOU
closed
4 months ago
1
peak-gene bed: 500 kb windows for each gene
#6
ofircohn
closed
4 months ago
2
Open dataset of SCENT peaks?
#5
gabrielcerono
closed
4 months ago
2
Updated SCENT package
#4
shakson-isaac
closed
1 year ago
0
Error about fix.by
#3
hbliu
closed
1 year ago
1
Help with single library with one replicate
#2
Biomaagi
closed
1 month ago
1
Missing 'batch' variable in bootstrapped function?
#1
porchard
closed
1 year ago
1