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hi folks, the bug we reported for Linux in #37 and #44 is baaaaaack! but this time for Mac OS X!
briefly, bcalm is producing a cDBG where there are links that are not bidirectional.
full details…
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As outlined in https://github.com/mbhall88/head_to_head_pipeline/issues/48#issuecomment-692496911 pandora has very low recall on some samples. This issue will document the investigation of the cause f…
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gatb-core has not make any new release for a while.
However, minia and other tools make use of gatb code more recent than available releases, and do not build with last gatb release. Since last relea…
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Hello,
The warnings shown below you may want to address.
Cheers,
Steffen
```
/home/moeller/git/med-team/gatb-core/gatb-core/thirdparty/BooPHF/BooPHF.h: In member function ‘void boomphf::bitVector…
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Bcalm 2.2.1 fails to build with clang on macOS 10.15.
```
In file included from /tmp/bcalm-20200120-5545-zrb02j/build/ext/gatb-core/src/gatb/template/TemplateSpecialization5.cpp.in_128.cpp:5:
1373
…
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I'm happily using GATB v1.4.1 for [LoRDEC](http://www.atgc-montpellier.fr/lordec/) but i'm now annoyed because i can't find `H5File::isHdf5` function in included hdf5 lib.
I fought hard to include …
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Morning,
I am on a Intel Core i& (64bit) Mac running OSX 10.11.6 with Xcode and Anaconda installed. When I run the make test or gatb directly I get the following error:
`gatb-pipeline requires a…
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After installing all dependencies, downloading the GATB-pipeline and running ```make test``` , i got the following output:
```
Checking Python
scipy OK
numpy OK
mathstats OK
pysam OK
There is n…
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Hi,
There was an error as fllowed. I can not find the reason. could you help me?
(2019-05-25 03:32:29) Execution of 'perl tools/sga-deinterleave.pl'. Command line:
perl /home/emma/gatb-minia-…
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Question1:
I use this command 'minia-v3.2.1-bin-Linux/bin/minia -in trim_cat.fq -kmer-size 101 -out-dir minia_assembly -max-memory 2048000' to assembly. But there was some error as followed in pictur…