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Hollis (@wrighth) is working on 3d visualization tooling for networks.
He is looking for potential datasets so Shannon McWeeney sent him our way.
Attached is an example of the format would needs the…
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http://www.columbia.edu/cu/tract/projects/complexity-theory
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Thank you for this code and the publication, which I found very interesting. I would like to use the trained GAN models, but I cannot find them in this repo. Would you please indicate where the files …
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I am interactively running the makeTRN-proximalonly-demo.R script which Seth fixed a database compatibility issue. It looks like it doesn't find any binding site for TF. I wonder whether this issue is…
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### Synthetic circuits integrating logic and memory in living cells
Piro Siuti, John Yazbek & Timothy K Lu (2013)
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**Global summary:**
- Strategy for building synthetic logic circu…
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I can not find this "signaling protein" regulator set of mouse in this directory.
Does this mean that the regulator set is not needed?
If this set is needed, do I need to create this regulator se…
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reviewed here for fission yeast
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9041340/
useful for modelling the pathway quickly.
I have captured already most of the 'causal model' in figure 4.
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I'd like to ask whether you could provide a Rfast version that contain the Rowsort function because this function is needed when infering the putative gene regulatory network (GRN) in the bigScale2 p…
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Use case: I'd like to combine footnotes from this package with [`ShortCodes.jl`](https://github.com/hellemo/ShortCodes.jl/tree/main)'s `DOI` to do something like:
```julia
md"""
As discussed in […
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**Describe the bug**
Running GRNBoost2 produces an error at the very last step.
Reproducible with the tutorial (https://pyscenic.readthedocs.io/en/latest/tutorial.html) using the GSE60361_C1-3005…
AAA-3 updated
12 hours ago