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[2] % memote new …
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Based on the confidence scores of reactions, we can add scores for reactions yeast model.
|Confidence|Score|Examples|
|:-:|:-:|:-:|
|Biochemical data|4|Direct evidence for gene product function a…
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Not sure about this, since users might be tempted to use it instead of much more robust solutions based on chemical ID mappings. Please add your comments below explaining why you think we should do it…
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Hi,
do you plan to implement the integration of metabolomics (absolute metabolite concentrations) for dG calculation?
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I am getting errors for testing production "mql6" and "mql7" because they are not in the model.
According to the paper of Xavier et al [1], these cofactors are not universal. Therefore, this should…
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## When I tried to use the script, I met many problems.
1.
>Traceback (most recent call last):
File "python.py", line 15, in
initial_environment = pyx.starting_environment(models)
Fi…
zzb23 updated
6 years ago
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I've been trying to do some larger runs with fireworks and noticed that a lot of the time a firework will get locked and prevent further execution. I think this is a recent issue since the switch to …
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**memote** is reporting missing NGAM when the lower bound of R_ATPM is zero.
I think it should check for the presence of NGAM but not force a particular value.
The principle of constraint-based …
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I have some annotated (GO, KEGG) RNA-Seq data of marine sponges. Can I use escher for pathway visualisation? Thanks
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* memote version: 2.0.3
* Python version: anaconda 3.6
* Operating System: Mac OS X 10.12.6
### Description
I want to set up continuous integration using Memote. I set up my github reposito…