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_Issue [HLA-741](https://jira.stsci.edu/browse/HLA-741) was created on JIRA by [Warren Hack](https://jira.stsci.edu/secure/ViewProfile.jspa?name=hack):_
Source catalogs generated as part of the SVM…
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Hi.
Unfortunately, I can't apply the "Cortex-Debug: Set Force Disassembly" command. I expect a new window in working space of vs code but the extension doesn't show the window with disassembled inf…
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Hi,
I saw in the web page you are developing ASCAT to work on WES bams directly, how is it now?
Or, can you please direct me how to get the logR and BAF from the WES bam files?
Thank you!
Tomm…
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During testing of our ATLAS deployment we had several searches which ran for days. An example is:
"IsRepeatSearchSet": false,
"ResultsFileName": "2b2d1724-c11b-4ba5-bc42-1a39a966e569.json",
"Mat…
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Currently if a patient genotype is:
(a) Unambiguous with respect to p-groups (used for matching calculation)
(b) Not represented in the selected (global) HF set
Then the patient HLA is marked a…
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since #707 we should be able to identify HLA lookup errors.
Currently these retry up to the retry limit (10 by default), causing a failure notification each time, and eventually ending up on the d…
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Is it meaningful to have a grouping for `MHCGenotype` based on MHC class I/class II?
In contrast to IG and TR, both classes of MHC genes and both chain types of Class II are located on the same l…
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e.g. if invalid HLA is provided by the consumer.
Currently this will fail 10 times, and the error message will be "something went wrong in matching algorithm, see AI for logs".
In practice, con…
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## 1. Bug description
I am running the basic pipeline, and it fails outside the MAGMA.Celltyping container.
## 2. Reproducible example
### Code
```R
topSNPs =1.99.2 via Biocondu…
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Reprodution steps:
nejsou jednoduchy, stalo se to tak, ze proste si dal raska generovat report vcetne pacientu a ono mu to misto reportu vratilo 500, ale kdyz jsem to zkusil ja u sebe, tak mi to fung…