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Hi,
I'm trying to install GapMind locally to be able to analyze multiple genomes at once.
I've followed the instructions in SETUP, but I'm having some issues regarding performing the analysis.
In f…
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In `StockholmIO.py`, all `.` characters are converted to `-` in the alignments, when these have distinct meanings.
From https://github.com/biopython/biopython/blob/c83880bc304a14006f534bd57028e1916fe…
wwood updated
10 months ago
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Hi, following your advice, I got ORFs instead of the translated genome via breaking the translated genome by stop codons.
A lot of ORFs are shorter than 5bp, and it seems that it's too short to predi…
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I ran Thread Sanitizer on our nhmmer test and it found this issue:
```
==================
WARNING: ThreadSanitizer: data race (pid=7289)
Write of size 8 at 0x7b50000070f0 by main thread:
…
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Hi hmmer team!
I am reaching out to ask if there are any plans to make hmmer compatible on the new Apple M1 chips? I've tried installing the package on my new machine with homebrew and from source …
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the error is below:
> running install
> C:\Users\qiuqingpo\AppData\Local\Programs\Python\Python310\lib\site-packages\setuptools\command\install.py:34: SetuptoolsDeprecationWarning: setup.py instal…
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Hi,
I have been using HMMER that I installed with conda on my Mac M1 pro. Unfortunately, I had issues with conda, so I uninstalled and re-installed conda on Mac.
Since then, I am having problem…
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Hi,
I have a confusing but possibly trivial issue,the following prompt appears when I try to run nhmmscan:
`Error: No MAXL field in model(s); is this an old model format? nhmmer/hmmscan require HM…
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I am trying to incorporate antismash into a conda environment along with several other programs that use Hmmer3.
Currently, the environment wont solve due to a conflict between antismash, which exp…
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Dear hmmer team,
Any possibility to support macOS m1 chip (ARM)?
Thanks,
Jianshu