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Re
https://github.com/geneontology/go-annotation/issues/3170
Can we get a taxon restriction for "host cell nucleus"
There are now. 54,000 annotations in GOA for vertebrates.
Should be able to …
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I used "trinotate_report_summary.pl" of Trinotate (https://github.com/Trinotate/Trinotate/releases/tag/Trinotate-v3.2.1) to generate a "cXp_summary.html" file, however, this html file shows up blank w…
ljyls updated
3 years ago
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Hi!
I annotated a reference genome, NCTC 11168, using a reference proteins file downloaded from NCBI https://www.ncbi.nlm.nih.gov/nuccore/AL111168 (using --proteins). I found that some genes are no…
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Would orthofinder be able to find fin orthologs one of which which was acquired via HGT?
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What is the difference between the 'Phages, Prophages, Transposable elements' and 'Phages, Prophages, Transposable elements, Plasmids'. How are 'Phages, Prophages, Transposable elements' incorporated …
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I was looking for a function that computes the distance between two taxons. Since I found nothing I would like to propose the following
```
## Load the Taxon Node Table from RSQLite into a data.…
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1. Single organism (pathogen) phenotype
unaltered ROS production
exact normal reactive oxygen species production
a single organism cellular process phenotype in which the formation of reactive oxy…
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Hello,
For my project I would like to estimate the `dN / dS on my branches`. So I have done it using codeml with ete3 and I got the following result :
![Capture d’écran 2019-10-28 à 14 53 01](h…
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Hello,
My run from before was able to finish but I just wanted to ask for some clarifications of some of the output files as I don't see anything in the README that specifically explains them.
W…
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* `make` fails on `Linux 4.15.0-52-generic`, current latest kernel for Ubuntu 18.04 LTS 64-bit, with Vanilla GNOME (used as developer and main workstation + some server services)
* *The package `inte…