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Dear Robert,
First of all many thanks for providing us with such an amazing pipeline :). I have installed bactopia using conda to my MacOS Big Sur. It looks like it has installed everything properl…
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klipper uses standard trapezoid acceleration as far I know. I never seen a firmware with s-curve like acceleration and I think it would work better for printers
Some video from https://www.youtube.co…
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This is a science issue in which software plays only a minor role through workable speed.
Inspection of a sample of homology-singleton genes shows that many of them look like crap and do not align …
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Hi, I use **hifiasm-meta** to assemble [urogenital tract metagenomics data](https://openstack.cebitec.uni-bielefeld.de:8080/swift/v1/CAMI_Urogenital_tract) from CAMI.
This data was simulated by [C…
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Hi, could you give some insight into when one would choose different values of 'target_orthologs'?
` --target_orthologs {one2one,many2one,one2many,many2many,all}
defines …
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Re
https://github.com/geneontology/go-annotation/issues/3170
Can we get a taxon restriction for "host cell nucleus"
There are now. 54,000 annotations in GOA for vertebrates.
Should be able to …
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I used "trinotate_report_summary.pl" of Trinotate (https://github.com/Trinotate/Trinotate/releases/tag/Trinotate-v3.2.1) to generate a "cXp_summary.html" file, however, this html file shows up blank w…
ljyls updated
4 years ago
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Hi!
I annotated a reference genome, NCTC 11168, using a reference proteins file downloaded from NCBI https://www.ncbi.nlm.nih.gov/nuccore/AL111168 (using --proteins). I found that some genes are no…
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What is the difference between the 'Phages, Prophages, Transposable elements' and 'Phages, Prophages, Transposable elements, Plasmids'. How are 'Phages, Prophages, Transposable elements' incorporated …
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Would orthofinder be able to find fin orthologs one of which which was acquired via HGT?