metageni SUPER-FOCUS issues

metageni / SUPER-FOCUS

A tool for agile functional analysis of shotgun metagenomic data

GNU General Public License v3.0

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issues

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Error in formating databases

#88 Felipe-Alexandre opened 5 months ago
3
Updating filepaths

#87 linsalrob closed 5 months ago
0
Databases not available anymore for download

#86 jbaer7 closed 5 months ago
1
output

#85 wittney-m opened 7 months ago
1
database issue

#84 wittney-m closed 8 months ago
4
Could not concatenate clusters at level 90

#83 wittney-m closed 8 months ago
3
diamond v2.0.xx

#82 bcpd closed 1 year ago
3
Can´t download databases

#81 JennsiS closed 1 year ago
5
subsample data

#80 linsalrob closed 2 years ago
0
non null alternative db

#79 metageni closed 2 years ago
0
can't download database

#78 ncanaless closed 2 years ago
9
Include mmseqs2

#77 linsalrob closed 2 years ago
0
version doesn't work

#76 linsalrob closed 2 years ago
4
Allow multiple separate fastq queries

#75 linsalrob closed 2 years ago
1
Conda install does not properly bundle db dir

#74 boulund closed 2 years ago
2
Add --db-dir argument to downloadDB script

#73 boulund closed 2 years ago
16
Using diamond with SUPER-FOCUS

#72 linsalrob closed 2 years ago
0
use uuid to create tmp dir

#71 metageni closed 2 years ago
0
Use environment variable for db

#70 linsalrob closed 2 years ago
1
single-file query no longer working?

#69 ModelMEMS closed 2 years ago
1
superfocus_downloadDB: Error opening database file

#68 ModelMEMS closed 2 years ago
9
conda install can't find database_PKs.txt

#67 linsalrob closed 2 years ago
0
smaller downloadDBs

#66 linsalrob closed 2 years ago
13
superfocus_downloadDB

#65 linsalrob closed 2 years ago
0
Functional abundance and discrepancy between Subsystem 2 and 3

#64 bishav6708 closed 2 years ago
3
fix UTF-8 error

#63 metageni closed 3 years ago
0
Non UTF-8 characters in the your database creating parsing errors

#62 carden24 closed 3 years ago
4
Please, help => ValueError: not enough values to unpack (expected 2, got 0)

#61 chulghim closed 2 years ago
1
increase field_size_limit

#60 metageni closed 4 years ago
0
_csv.Error: field larger than field limit (131072)

#59 s4251484 closed 4 years ago
3
"FOCUS is not avaliable on this version"

#58 cbjurnemark closed 4 years ago
4
superfocus_downloadDB -i is required

#57 linsalrob closed 4 years ago
1
Description on functional profiles

#56 bishav6708 closed 4 years ago
1
fix diamond

#55 metageni closed 4 years ago
0
amino acid sequences

#54 lidpeck closed 4 years ago
10
not enough values to unpack error

#53 bcpd closed 3 years ago
5
Superfocus normalization?

#52 Thomieh73 closed 4 years ago
2
Issues with Excel-based output

#51 ctseto closed 5 years ago
2
rapsearch database cannot open

#50 s4251484 closed 5 years ago
2
IsADirectoryError: [Errno 21] Is a directory: '/home/mdimdadi/14777R/FastQ/Passed_Reads/14777x5/5_superfocus_output'

#49 ghost closed 5 years ago
11
[new release - features] SUPER-FOCUS 0.37

#48 metageni closed 3 years ago
0
[feature] change -n 0/1 to only -n using `action='store_true'`

#47 metageni closed 5 years ago
0
What kind of normalization does SUPER-FOCUS perfom?

#46 adlape95 closed 5 years ago
2
manual db download

#45 metageni closed 5 years ago
0
[feature] Add check for database before running based on aligner and cluster choice

#44 metageni closed 5 years ago
0
Delete alignments (-d)

#43 metageni closed 5 years ago
0
Very very large .m8 temporary files

#42 theo-allnutt-bioinformatics closed 5 years ago
5
Database error: BLAST and Diamond

#41 s4251484 closed 5 years ago
14
add logger parameter

#40 metageni closed 5 years ago
0
improve docs

#39 metageni closed 5 years ago
0