-
Computer: mac osx
My quest for getting things to work:
First, a non-clang compiler, couldn't figure that out:
```
make CC=/usr/bin/gcc
Cloning into '/Users/smwaters/canu/src/utility'...
War…
-
Dear, I have metagenome assembly of two samples that I am trying to bin. Although I have a high abundance of Proteobacterial reads, after binning I don't get any Proteobacterial bin. What could be the…
-
I am assembling sequel reads which seem quite error rich 7-8% as determined by canu.
Would you advice to correct my error-rich reads using illumina reads prior to canu assembly or rather correct th…
-
Hello, When I used canu to assemble my Acinetobacter baumannii genome, I encountered an error, which said "the read coverage(6.18) is too low to be useful". I tried again with the same error output, a…
-
I installed all dependencies and I still obtain "Error" with the default command line and I'm running out of ideas.
Thanks in advance for the help.
2019-04-14 15:02:58 INFO: [GenomePreparation 1…
-
GIven the interest in studies that involve tumor heterogeneity / subclonality, currently bcbio offers "out of the box" support for both somatic variants and CNVs. A useful metric that can be combined …
-
Hi all,
Can you provide a little more background info for the `hicCorrelate` optional parameter `--range`?
So, for example, let's say a user wants to plot the correlation between two technical r…
-
fasta: http://gannet.fish.washington.edu/Atumefaciens/20190102_metagenomics_geo_megahit/megahit_out/final.contigs.fa
then use coverage file
http://gannet.fish.washington.edu/Atumefaciens/20190102…
sr320 updated
5 years ago
-
Hi,
I installed Anvi'o on my VM Ubuntu 18.04 OS following the guidelines for "painless installation with Conda" on the merenlab website, however when doing the self-test I keep getting the error mes…
-
Hi there,
I installed anvio-5.5 on my computer with Ubuntu 19.04 using the following command:
```
conda create -n anvio5 -c bioconda -c conda-forge anvio=5.5.0
```
Then I tested the installatio…