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Hi Vadim,
We have an experiment that requires only intensity values without normalizition.
I tried to run DIANN with the additional commands:
--no-maxlfq
--no-norm
and the output tables were e…
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|------------------|-----------------|
|Previous ID | SR-4881 |
|Radar | None |
|Original Reporter | _BrandonBradl…
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Hi,
I want to analyze LFQ-DIA global proteome and phospho-enriched proteome data separately on DIA-NN. Just want to make sure that we need two different libraries for these two different searches, r…
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**- Upload your log file**
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the…
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Hi Vadim,
I am trying to use the new version for PTM analysis. I can see the quant files but no output (none of report.tsv files) is generated. Especially if click MBR ON it gives output but withou…
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@timosachsenberg , Oliver said you might have some Galaxy workflows that used the output of CTDConverter?
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Please share the demo file in excel for each in data
Quang
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Hello @acesnik ,
I am opening this issue here so I can share some thoughts of what I perceive as some issues with the format of the output fasta file from Spritz to be used in FragPipe as initiated…
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Could directLFQ be adjusted to output phosphopeptide/site level aggregations?
I'm curious how much effort this would take.
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Dear Vadim,
We have been using DIA-NN for a while and it is great.
Recently we have experienced some issues when trying to analyse TIMS-TOF DIA-PASEF data from plasma samples using either the lib…