-
https://mp.weixin.qq.com/s/qzZNXn2OoaYS7jotCSMAnQ
ixxmu updated
9 months ago
-
Popmeta does not seem to be generating 2-locus haplotype results files after [Emhaplofreq] has generated data.
I am using stripped down version of the WS_BDCtrl_Test_EM.ini file (WS_BDCtrl_Test_EM…
-
Sorry this is a very basic question: how can I read a local file into a "dataset" to be used by coloc? Suppose I have a tab delimited text file with "b" for beta, "SNP" for snp, "pos" for position. I …
-
Hi Lingfei,
I been reviewing the papers you have published on findr. I really like the concept of causal anchors to derive causal networks from human genetics and transcriptomics data.
I wonder if…
-
Hello Xihao,
I was interested in examining which tests (STAAR-S, STAAR-B, STAAR-A) and annotations are the primary drivers of the overall STAAR p-value generated. I noticed that the paper gives equ…
-
My collaborator and I would like to use Variant Spark to identify genetic variants associated with colorectal cancer risk. Our dataset is about 350.000 individuals from UK Biobank and more than 10 mil…
-
An error pop-up when running simulations with `snp_linkage_disequilibrium` is `true` (see below + [generate-sweep_part1.txt](https://github.com/pascualgroup/varmodel3/files/9633322/generate-sweep_part…
-
Hi,
I'm trying to use the function gl.report.ld.map, so later I can use the output to filter loci based on linkage disequilibrium but I'm getting an error message. Below is my code and error messag…
-
Hello Marcus,
Say I used megalodon for base calling with remora pretrained model to detect 5mC modification, which probability will you suggest to call certain C to be C+m modified based on ML:B tags…
-
Dear SuSiE creators:
> I ran SuSiE on my summary statistical data and external reference LD. I got many warning messages that said, "IBSS algorithm did not converge in 100 iterations!" I first ign…