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Hi, I'm having the same exact issues as the OP for this thread. Was this issue ever resolved?
I went through all the steps in that issue thread but the h5 files continue to be generated in the imag…
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Hi :),
Nice paper.
I want to reproduce the results but I notice that you describe the processing of the WSIs but, can you share the script for the preprocessing step?
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Hi,
Can you please share generate_rois.py code here?
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I'm just wondering how to apply ABMIL in WSI for the comparison in Table 1?
I have read ABMIL's code, the input size of its model is: (1, bag_length, 1, width, height), due to the images of the data…
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I was able to run train my models successfully with main.py but am now trying to use eval.py on an external dataset. I'm getting an error stated as `UnboundLocalError: local variable 'data' referenced…
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Firstly, I should thank mahmoodlab @faisalml and Dr. @fedshyvana for their great work in this area.
I just learning CLAM to preprocessing TCGA WSI svs files, and I have now utlized CLAM to:
(1)…
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Thank you for open-sourcing the code of the paper.
I want to make a model using TCGA. However, When i make patch, block box is made. So a lot of image patches is disappeared.
![image](https:/…
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Hi,
I am trying to use your framework on a dataset that I am trying to work on in my research work. The Whole Slide Images are generated in .mrxs format (unfortunately it's a costraint that I can't c…
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Dear Prof. Mahmood,
I would like to use your CLAM software for tumor tissue prediction of primary breast cancer. I have a few questions, some related to the documentation on how to run the tool.
…
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Hi! I think we need to catch an exception with something like "if writer is not None:" here:
https://github.com/mahmoodlab/CLAM/blob/e37eb3bac3c72e0f6e3127a01dee8cf4300d7eec/utils/core_utils.py#L22…