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### What is the schema name?
MERFISH
### Share the Google Sheets URL to the metadata schema with a read access.
https://docs.google.com/spreadsheets/d/1kd1UQ2il-eW-MTM4iEotyAxa8M_hcwn8yQJTU_II-F8/e…
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### Description
Related thread: https://github.com/stellargraph/stellargraph/pull/1187#discussion_r402042179
#1187 introduced a `walker` parameter that can be used to customise the behaviour of the …
kjun9 updated
4 years ago
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**Describe the bug**
This was noticed on [RStudioConnect ](https://ccb-rstudio-connect.hms.harvard.edu/Vitessce_hypothalamus_python/) which converts all juypter content into html via Nbconvert. The…
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Hi,
Is it possible to run gpsFISH without spatial count and spatial cluster datasets (or can it run with spatial count and cluster datasets provided in the tutorial)? I am working with the datasets…
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**Update metadata:**
https://docs.google.com/spreadsheets/d/1QCeAF4yQG4bhZSGPQwwVBj_XF7ADY_2mK5xivAIfHsc/edit#gid=0
**Details of method (publication, GitHub):**
https://www.nature.com/articles/s4…
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I was gearing up to update the clustering code I and others use to make it 1) compatible with the most recent stable release of scanpy instead of the development version I was originally wrapping and …
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Dear scverse Team,
First of all, thank you for your effort on developping integrative frameworks for spatial transcriptomics data.
Now, I'm analyzing MERFISH data using spatialdata. When I use c…
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Map the neuron types between the cell types of BICN. We focus on the datbase : https://alleninstitute.github.io/abc_atlas_access/intro.html and the four cell types : SSt, Pvalb, Vip, and one of excit…
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# Design (@brianraymor)
## obs
...
### modality
Key
modality
Annotator
Curator MUST annotate.
Value
categorical wit…
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This is to keep track of issues that might arise on the relationship between `instance_key` and the indexes of regions.
### Motivation
The link between a table and it's region object is specified …
giovp updated
7 months ago