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Dear Andreas,
I am trying to use your script query_missingGenes_from_module to spot missing genes from module but I need to do it recursively on multiple modules (a list provided) and then write the …
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Quick question – are the models generated by this tool meant to be simulation ready? I am running multiple model reconstructions and all of them do not supply biomass requirements and hold no growth. …
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Hello,
I get this error when I try to run metaerg
unning: diamond blastp -k 1 --quiet -k 1 --masking 1 -p 8 -q metaerg.pl_10162019/tmp/cds.faa -d /hpc-home/ravia/tools/metaerg/db/diamond/uniprot_…
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@lawinslow : we've talked about this a bit.
Using the simulated data at the end of `?metab` produces the following:
![funnymetabolizer copy](https://cloud.githubusercontent.com/assets/5630847/524612…
rBatt updated
9 years ago
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sppb.msm
ghost updated
5 months ago
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Hi,
I have a project where I am using half life data from a liver microsome assay to obtain initial hepatic clearance values. I have previously been using the PK Sim default values for microsomal p…
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### Checklist
- [X] There are [no similar issues or pull requests](https://github.com/opencobra/cobrapy/issues) for this yet.
### Problem
Using the same model, implementation of add_loops (addLoopL…
dagl1 updated
4 months ago
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## Short description of the problem
KeyError: 'reaction_network_ko_annotations_hash' when running `anvi-reaction-network`
## anvi'o version
```
Anvi'o .......................................: …
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Hi Daniel,
I'm calculating MIP and MRO based on MAGs assembled from different samples using SMETANA. The number of MAGs assembled varies between each metagenomic sample. Can I compare MIP and MR…
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A set of 16 compounds have just been sent to Dundee for screening against _P. falciparum_.
THE PREDICTIVE MODELLING COMPETITION HAS CONCLUDED ([HERE](https://github.com/OpenSourceMalaria/Series4_Pr…