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The definition of GO:0071941 nitrogen cycle metabolic process is "The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encom…
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Hello,
I am trying to annotate a reptilian genome that has a fairly good scaffolded assembly (N50 = ~215MB; 1,966 scaffolds). Genome busco completeness is ~93%
I have RNA-seq data from a pooled se…
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We select a single representative genes for groups of alternative allele genes. These groups are based on the upstream `alt_allele` table, which provides a mapping between `gene_id`s and `alt_allele_g…
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Hello I am using version 1.8.11
I ran the funnanotate command as follows:
$ funannotate predict -i $genome -o $outdir_predict -s "species" --cpus 10 \
…
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Az [Online Vízügyi Szótár](https://www.gwpszotar.hu/altalanos-tajekoztato) kb. 3300 kifejezést tartalmaz. Kigyűjtöttem azokat, amelyeket hibásnak jelölt a szótár, de a kigyűjtésen túl nem végeztem ele…
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### Prerequisites
- [X] make sure you're are using the latest version by `taxonkit version`
- [X] read the [usage](http://bioinf.shenwei.me/taxonkit/usage/)
### Describe your issue
#### Opti…
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Some categories that the bot puts files in are not wanted over at Commons, e.g. "Middle aged" and "Young adult". I think the best way to handle that would be to have a blacklist of categories that can…
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We should have a DP to document has-part to CL. This would primarily be a documentative DP as it would not have an equivalence axiom.
We would document anti-patterns. The primary antipattern is mak…
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I'm wondering what the best way to build a taxonomy for use in phyndr. I can retrieve for each species in the tree a lineage from domain to species, but they will be extremely variable in the number o…
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Hi,
I have four nematode genome samples and I'm running BRAKER with genemark epmode to annotate with protein + genome, with RNA + genome, and then combine the two with TSEBRA. 3 of the genomes proces…