issues
search
related-sciences
/
ensembl-genes
Extract the Ensembl genes catalog to simple tables
Other
17
stars
4
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error Exporting Ensembl 111
#25
ACastanza
closed
7 months ago
6
Transcripts missing in ensembl xrefs data
#24
emapple
opened
12 months ago
1
Missing argument 'CLS' when Running Workflow
#23
ACastanza
closed
12 months ago
6
Ensembl human release 110: assembly_exception table is empty
#22
dhimmel
opened
1 year ago
4
Ensembl release 109 seq_region table needs repair
#21
dhimmel
closed
1 year ago
3
switch from fire to typer for CLI application
#20
dhimmel
closed
1 year ago
0
Add annotation source to GO xref query
#19
eric-czech
closed
2 years ago
3
Use pyarrow instead of fastparquet
#18
ravwojdyla
closed
2 years ago
0
Use `pyarrow` instead of `fastparquet` to write parquet data
#17
ravwojdyla
closed
2 years ago
3
Retry query when MySQL connection is lost
#16
dhimmel
opened
2 years ago
0
xref_df: add bioregistry normalized curie
#15
dhimmel
closed
2 years ago
0
Separate source info from gene description
#14
dhimmel
closed
2 years ago
1
Update for mRatBN7.2 Assembly
#13
ACastanza
closed
2 years ago
0
Ensembl Upgrade to Rat Assembly mRatBN7.2 Breaks Export
#12
ACastanza
closed
2 years ago
5
Separate description source from gene description text
#11
dhimmel
closed
2 years ago
3
homo_sapiens_core_104_38: SMN2 xrefs SMN1 in EntrezGene
#10
dhimmel
closed
2 years ago
4
Ensembl alt_allele tables does not contains all alternative allele gene groups
#9
dhimmel
opened
2 years ago
10
MHC / xMHC genomic coordinates for rat & mouse
#8
dhimmel
opened
2 years ago
0
apply standard poetry package structure
#7
dhimmel
closed
2 years ago
0
add support for rat species
#6
dhimmel
closed
2 years ago
2
Address and Filter NCBI Gene IDs misassigned due to read-through transcripts
#5
ACastanza
closed
2 years ago
2
Support species besides human?
#4
dhimmel
closed
2 years ago
9
Detect latest ensembl using bioversions
#3
dhimmel
closed
2 years ago
0
Use tags instead of branches for different versions
#2
cthoyt
opened
2 years ago
3
Automate detection & export of new ensembl releases
#1
dhimmel
closed
2 years ago
5