related-sciences ensembl-genes issues

related-sciences / ensembl-genes

Extract the Ensembl genes catalog to simple tables

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issues

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Error Exporting Ensembl 111

#25 ACastanza closed 9 months ago
6
Transcripts missing in ensembl xrefs data

#24 emapple opened 1 year ago
1
Missing argument 'CLS' when Running Workflow

#23 ACastanza closed 1 year ago
6
Ensembl human release 110: assembly_exception table is empty

#22 dhimmel opened 1 year ago
4
Ensembl release 109 seq_region table needs repair

#21 dhimmel closed 1 year ago
3
switch from fire to typer for CLI application

#20 dhimmel closed 1 year ago
0
Add annotation source to GO xref query

#19 eric-czech closed 2 years ago
3
Use pyarrow instead of fastparquet

#18 ravwojdyla closed 2 years ago
0
Use `pyarrow` instead of `fastparquet` to write parquet data

#17 ravwojdyla closed 2 years ago
3
Retry query when MySQL connection is lost

#16 dhimmel opened 2 years ago
0
xref_df: add bioregistry normalized curie

#15 dhimmel closed 2 years ago
0
Separate source info from gene description

#14 dhimmel closed 2 years ago
1
Update for mRatBN7.2 Assembly

#13 ACastanza closed 2 years ago
0
Ensembl Upgrade to Rat Assembly mRatBN7.2 Breaks Export

#12 ACastanza closed 2 years ago
5
Separate description source from gene description text

#11 dhimmel closed 2 years ago
3
homo_sapiens_core_104_38: SMN2 xrefs SMN1 in EntrezGene

#10 dhimmel closed 2 years ago
4
Ensembl alt_allele tables does not contains all alternative allele gene groups

#9 dhimmel opened 3 years ago
10
MHC / xMHC genomic coordinates for rat & mouse

#8 dhimmel opened 3 years ago
0
apply standard poetry package structure

#7 dhimmel closed 3 years ago
0
add support for rat species

#6 dhimmel closed 3 years ago
2
Address and Filter NCBI Gene IDs misassigned due to read-through transcripts

#5 ACastanza closed 2 years ago
2
Support species besides human?

#4 dhimmel closed 3 years ago
9
Detect latest ensembl using bioversions

#3 dhimmel closed 3 years ago
0
Use tags instead of branches for different versions

#2 cthoyt opened 3 years ago
3
Automate detection & export of new ensembl releases

#1 dhimmel closed 3 years ago
5