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Hi,
Thanks for creating this package. I'm currently seeking to apply it to my microbiome project. I'm a bit confused about the recommended use as there are functions within the separate R scripts a…
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This is a valuable project and should be followed up !
We will try to revive it and expand it to a general microbiome DB framework.
Could you please include detailed instructions on:
* How to ru…
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Hi Joey,
In post #508 above you wrote:
## How To Merge
The OTU IDs between the studies need to match up. You can use **merge_taxa** to get around this, but this is meaningful only if the taxon…
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Hi, Thank you so much for the workflow. I'm recently facing the below issue at the DE step. Could you kindly have a look at the issue when possible?
Analyzing fetal-brain test data
### download …
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A. Alpha diversity
a) Metrics – richness, phylogenetic diversity, Shannon Index)
1) Coefficient of variation (CV = standard deviation/mean) – useful to compare the variation of two populations indepen…
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Hi Chen,
I have no issues with the package and I was able to carry out my analysis without having any hitch. However, is it possible to increase the font size of the image generated especially from t…
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Activity to be done as a team with @LLansing , @glchn , @jlobri , @jonathho , @MorganCunningham , @linzhi-wu
The goal is to have a single workflow that is used by all the team and that includes th…
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Level | Chap | Activity | Packages | Data
|:-------|:-------|:---------------------------------|:-----|:-----|
100 | 2.3 | Introduction to Bioconductor | rtracklayer, Genomi…
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Hello everyone! I am a beginner in microbiome analysis with R.
After saving the .qza files generated by QIIME2 on my own PC, an error occured with import_qiime2() :
`
>library(microbiomeMarker)
>o…
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Hi, I wonder any possibility identify core microbiome using microeco object? Like filtering based on the prevalence and abundance? Pls let me know!