-
This is another instalment of comparing the extant mammal taxonomies in MDD and my Hesperomys database, using a spreadsheet kindly prepared by Connor. I'm accepting most of the changes, but there's a …
-
Hello,
I'd like to get some more information about the recent changes I have noticed in the supplied hosted genome GRCh37/hg19 especially in the alias. Since 29-08-2024 I noticed that GRCh37/hg19 a…
-
### Operating System
Other Linux (please specify below)
### Other Linux
Linux 5.14.21-150400.24.28-default
### Workflow Version
wf-single-cell v2.1.0-ga25ec6c
### Workflow Execution…
-
Hi Sina,
I've been trying to run read2tree in multispecies mode using a custom set of marker genes (200) for 24 primate species I downloaded from OMA using the tutorial you've provided. The first s…
-
Hi,
I tried using `format_database.pl` to format the `repbase` data. I basically concatenated all the references.
`cat RepBase21.01.fasta/*.ref RepBase21.01.fasta/appendix/*.ref > repbase_all.fasta…
-
Hi, I am trying your method to construct the mt genome, it is very fast which surprised me, My fastq data quality is not very good, I found the final result has multiple scaffolds and many same genes …
-
## MitoZ version?
version 3.6
## Did you run a test after your installation, and was the test run okay?
yes
## Problem description
Dear teacher MENG
By reading the paper,i find mitoz will firs…
-
* **PTHR ID & PTN node:**
This is a DNA helicase so the annotation to translation seems indirect (is also annotated to genome meaintenece)
IRC3 | Double-stranded DNA-dependent helicase of the DE…
-
* **PTHR ID & PTN node:**
GO:0009063 | amino acid catabolic process | IBA with PTN000480319 , locus:2176446 , P38117
* **Sequences with problematic annotation (ID + gene/protein name):**
…
-
* **PTHR ID & PTN node:**
GO:0004591 | oxoglutarate dehydrogenase (succinyl-transferring) activity | IBA with PTN002055411 , S000001945
* **Sequences with problematic annotation (ID + gene/prote…