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At the moment, filtered data is stored as images only. There is no option at the moment to convert it back into mzXML or mzML files (at least for images containing more than a single map).
This conve…
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Unfortunately we got different values for `TIC` and `BasePeakIntensity` from `mzML` and `ScanHeadsman`:
```
colData(myo)[, c("TotIonCurrent", "TIc",
"BasePeakIntensity.SpectraInfo…
sgibb updated
6 years ago
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The raw data file import generates an mzML with only the last m/z isolation step. Usually mzML has multiple precursor ions sorted by MS level. See the snap below for MS3 from .raw.
@tomas-pluskal do …
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@sureshhewabi:
These are the first projects we should convert:
- [ ] https://www.ebi.ac.uk/pride/archive/projects/PXD000561
- [ ] https://www.ebi.ac.uk/pride/archive/projects/PXD000865
- [ ]…
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File format conversion can be made with the compass software, see https://github.com/rformassspectrometry/RforMassSpectrometry.org/issues/18#issuecomment-1834408893
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I was running spectramerge and I found this error that lead to no output file being created. It looks like an unhandled cvParam stopped the writing of the output file. This file worked on the smoot…
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Issue in copying file to specific directory as non-root user:
[Errno 13] Permission denied: '/home/folder-path/File014.mzML'
Traceback (most recent call last):
File "/usr/local/lib/python3.9/sh…
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- Describe the issue or question:
Enabling writing sub-mzML fails with FragPipe v21 when the source MS data file is not an mzML file, but does work on v20.
The relevant snippet from the log file…
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Hi,
In order to get familiar with your tool, I tried to reproduce the TIDE+Percolator-RESET plot in the figure 3 of your article. However, the 3 methods returned me a FDP greatly below the FDR thre…
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Hello,
I am having problems using copyWriteMSdata (to manipulate peak data), from mzML files that have originated from an Orbitrap Fusion. I am using mzR_2.12.0. Specifically, certain CV fields a…