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@Midnighter requests at https://github.com/SBRG/bigg_models/issues/368:
Many models in BiGG are currently annotated with a taxonomic identifier and a reference to the model itself, for example, as …
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Hi,
I am interested in making new viral references for a large number of viruses. I have been finding there are a lot more or a lot less references in NCBI/RefSeq/GenBank etc etc, depending how you…
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https://github.com/NaturalHistoryMuseum/scratchpads2/issues/6594#issuecomment-1316879613
> I will ooen a new ticket for documentation specifically to provide more info on how ncbi works with taxono…
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Pseudogenes
rRNA
tRNA
miRNA
ncRNA
see tbl format spec here: http://www.ncbi.nlm.nih.gov/genbank/genomesubmit_annotation
see GFF3 format spec here: http://www.sequenceontology.org/resources/gff3.html
…
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**Overview of the Feature Request**
Possibility of exporting a dataset metadata in a format for NCBI's Genbank/SRA
**What kind of user is the feature intended for?**
(Example users roles: API U…
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**Is your feature request related to a problem? Please describe.**
I would like to be able to quickly determine what research article I should reference simply from looking at the output of `datasets…
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Greetings DUO team,
Because DUOs are a living standard versioning of the codes is a necessity. The current versioning used for DUO codes uses a date which can be difficult for data submitters to fa…
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testdata/adeno.gb has the `order` location attribute, which we don't handle explicitly if it's different form `join`
There are more, and may be covered in the biopython, scikit-bio, and NCBI docume…
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### Discussed in https://github.com/facebookresearch/esm/discussions/340
Originally posted by **igortru** November 4, 2022
please, add protein sequence crc64 column to metadata file
(or any…