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genomeannotation
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GAG
Generates an NCBI .tbl file of annotations on a genome.
MIT License
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Error while running GAG2.0.1
#198
sanyalab
closed
3 days ago
1
Fix_start_stop does not resolve all issues
#197
emmannaemeka
opened
3 years ago
2
Add info/link to EMBLmyGFF3 the similar tool for submission through ENA
#196
Juke34
opened
4 years ago
0
GFF3 incompatibilities
#195
mictadlo
opened
4 years ago
2
GAG is ignoring the locus_tag information from the gff
#194
anausie
closed
5 years ago
2
lost features from Augustus input
#193
splaisan
opened
5 years ago
8
Unable to read gff "no parent..."
#192
arsilan324
opened
6 years ago
0
NO parent
#191
emmannaemeka
opened
6 years ago
0
Flag/remove contained genes
#190
jannafierst
closed
7 years ago
2
alternative start codons
#189
balaena
opened
7 years ago
0
Features not added
#188
jaylward2
opened
7 years ago
2
Hotfix/correct version number
#187
fbremer
closed
7 years ago
0
updated version to v2.0.1
#186
fbremer
closed
7 years ago
0
gag.py --version
#185
nextgenusfs
closed
7 years ago
1
Update tests so pull from Arabidopsis-Information-Portal:dev passes
#184
fbremer
opened
7 years ago
0
V2.0 rc.2
#183
fbremer
closed
7 years ago
0
New features (refs #163)
#182
vivekkrish
closed
7 years ago
0
Write mrna fasta file
#181
fbremer
closed
7 years ago
0
More descriptive .fasta headers
#180
fbremer
closed
7 years ago
1
using super instead of hardcoding parent class
#179
fbremer
closed
7 years ago
0
Bug/trim scaff not remove from out files#171
#178
fbremer
closed
7 years ago
0
fixed test_summary_without_modifications test for StatsManager
#177
fbremer
closed
7 years ago
0
Fix test summary without modifications
#176
fbremer
closed
7 years ago
0
test added for mrna_to_protein_fasta on '-' with nonzero phase
#175
fbremer
closed
7 years ago
0
#166
#174
fbremer
closed
7 years ago
0
Clean up
#173
fbremer
closed
7 years ago
1
Clean up
#172
fbremer
closed
7 years ago
0
Trimming out an entire scaffold does not remove it from output files
#171
kylecannoles
closed
7 years ago
0
incorrect positions created by fix_start_stop on - strand
#170
melisakman
closed
7 years ago
3
New version release?
#169
nextgenusfs
closed
7 years ago
3
Incorporate fixes into dev branch
#168
kylecannoles
closed
7 years ago
1
Pylint
#167
fbremer
closed
7 years ago
0
Feature positions on the negative strand are not calculated correctly
#166
thobrock
closed
7 years ago
16
Problems with proteins generated from GFF file
#165
DRL
closed
8 years ago
11
Dbxref
#164
hyphaltip
closed
7 years ago
0
Add ability to write RNA features and pseudogenes
#163
smg283
opened
8 years ago
7
Impact of fixing start and stop codons
#162
tarunaaggarwal
closed
8 years ago
6
ID-tag necessity
#161
desiro
opened
8 years ago
3
Use argparse or click for the describtion of commandline interfaces
#160
bgruening
closed
9 years ago
3
update docs wrt fix/flag operations
#159
bruab
closed
9 years ago
0
command line version of the fix/flag operations
#158
bruab
closed
9 years ago
1
write mrna fasta file
#157
bruab
closed
7 years ago
0
command line flag to fix terminal Ns
#156
bruab
closed
9 years ago
0
write stats report
#155
bruab
closed
9 years ago
0
write proteins fasta
#154
bruab
closed
9 years ago
0
utility script to update a vcf based on "trim" bedfile
#153
bruab
opened
9 years ago
0
genome.removed.gff
#152
bruab
closed
9 years ago
1
Phase Verifier
#151
bruab
closed
9 years ago
1
More descriptive .fasta headers
#150
bruab
closed
7 years ago
1
GAG discards UTR features
#149
marchoeppner
opened
9 years ago
5
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