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NotationConverter.normalizeGenomicLocation(GenomicLocation genomicLocation) will strip a common nucleotide prefix from a Genomic Location, removing invariant nucleotides at the start of the variant fr…
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I have been using a core genome alignment as input of grapeTree stand-alone version, but it crashes when the alignment contains too many sequences because of a memory issue (I do not have enough memor…
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I want to create a `variant_catalog.json` file to identify VNTR in FcRn gene using WGS sequencing data.
The FcRn gene contains a VNTR sequence consisting of three repeats of 37 nucleotides each, wit…
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Hi all,
I am using the IGV 2.18.4 app on my MacBook M1.
Usually, zooming in completely on a region of a target sequence suffice to display the nucleotide sequence of this particular region.
…
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Is there a way to specify error tolerance for a specific subsequence within an adapter?
For example, in my regular 5' adapter, the first 8 nucleotides indicates the sample identity but the following …
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When I try to click the 'G' I am not able to.
When I move t…
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Dear developers,
I am currently working with miRNA-seq reads from Illumina platforms, whose length ranges roughly from 16 to 30 nucleotides.
Do you think bowtie can outperform other popular mapp…
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### Ask away!
Hi!
**I get an error in the log file:**
executor > local (24)
[bd/f84e36] process > validate_sample_sheet [100%] 1 of 1, cached: 1 ✔
[d7/72c478] process > fastcat (10)…
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**Description**
**Sub-lineage of:** JN.1.4
**Earliest sequence:** 2024-9-20, Hong Kong, EPI_ISL_19464534
**Most recent sequence:** 2024-10-10, Hong Kong, EPI_ISL_19498393
**Continents circulatin…