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Hello,
I have some methlyation EPICv2 data that I am trying to perform differential methylation regional (DMR) analysis on, and am having some trouble using the customized packages (specifically t…
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This issue regards the [BIDS derivatives specification for spatiotemporal decompositions](https://docs.google.com/document/d/17ebopupQxuRwp7U7TFvS6BH03ALJOgGHufxK8ToAvyI#heading=h.dbfk7w8jo2wp), in pa…
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Hi, sorry if this was already addressed in a previous issue-- I was not able to source a solution to this. I ran Harmony on a relatively large (~21k cells) merged Seurat v4 object with the following c…
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I first estimated rho, gene conversion rate and track lengths using mlrho and following the method in Lynch et al (2014; Genetics) from my data consisted of 20 unphased diploid individuals (40 chromso…
melop updated
2 years ago
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Hi there, thank you for the great and detailed package!
I was wondering if you could help me resolve an error with the pipeline where the process is killed before STAR alignment is finished. I am r…
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When trying to run fastReport I noticed, that the ID for PCA and MDS Reports are the same. I believe that those functions (for pca `prcomp()` and for mds `cmdscale()` but also `isoMDS` and maybe the o…
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Video URL: https://www.youtube.com/watch?v=ioXKxulmwVQ
### Contents
0:03 Speaker Introduction
0:20 Presentation Agenda
1:24 Dimensionality Reduction (DR), a brief overview
3:30 DR techniques ar…
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Hi,
using sleuth 0.30.0 I experience trouble when using sleuth_live.
Some plots throw error messages and weird behaviour. For example when trying to look at the scatter plot I get the following er…
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library(shiny)
library(ggplot2)
ui
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I was preparing some examples for my classes and for me it seems that JAMOVI / jmv has difficulties computing the correct initial eigen values in factor analysis (compared to fa() from psych toolbox b…