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https://github.com/scikit-bio/scikit-bio/pull/1894 added short-circuits to produce `0` where previously the formula would produce `NaN`.
This is currently impacting QIIME 2's diversity measures and…
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Hey again,
I was able to run this pipeline successfully with test and real data, but am running into an issue I can't solve with a new set of real data. Here is my command:
```
nextflow run mai…
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**Describe the problem**:
Issue originally reported on the GBIF feedback portal: https://github.com/gbif/backbone-feedback/issues/263 by @PatrickKennedy2022
Patrick noticed that the following gene…
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as suggested by @n8upham -
suggest to index https://www.sciencedirect.com/science/article/abs/pii/S0960982222004006
Gaüzère, P. et al., 2022. The diversity of biotic interactions complements fu…
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Note that BTA_55@25d368c7 can be expressed as
```
curl 'https://linker.bio/line:hash://sha256/26d368c772f240d65645248caa56dabae5cb2414ac57e8f0438d4c3dcf62e377!/L2,L55.tsv'\
| mlr --itsvlite --o…
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These are from SILVA, but seem to have no subtaxa, and may simply be RNA sequence clusters. Not sure if anything need to be done about this or not, to if it is symptomatic of a general SILVA issue
#
…
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Hi Erik
I've been running Seqwish with the output from minimap2 and edyeet for comparison, across multiple chromosomes and also testing with multiple whole genomes.
I've found the PAF files fro…
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Hi,
I am using vegan::fisher.alpha(). My test data is
```
> otu_table(GAGA_ampSeq.physeq.rarefy)[1:10,20:24]
OTU Table: [10 taxa and 5 samples]
taxa are rows
…
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I ran a script to compare Hesperomys against the latest release of the MDD: https://gist.github.com/JelleZijlstra/0bb7845fdf451ebaffe7878ee140fd21. There's a lot of harmless small differences (e.g., d…
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### Overview
We are encountering some issues in obtaining appropriate estimates of error rates; I believe these problems are coming from our new(-er) sequencing facility sending us fastq files contai…