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Hi @krchristie
What proteins interact with the RNA polymerase II core promoter? I am looking at annotations to 'GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding' and it see…
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Hi Rongxin,
I'm trying to run SnapATAC and I'm getting an error that I'm having trouble getting around/solving. It's in the `runJaccard()` step. All steps prior to this work. I started the analysis f…
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```
p
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Hello
The code of line 530-558 in the [06-genomicIntervals.Rmd](https://github.com/compgenomr/book/blob/master/06-genomicIntervals.Rmd) can't run successfully:
```r
# get transcription start s…
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Dear Team,
I am calculating Partition heritability , but I am getting error of "parsing annotation error". Can you please help me with this? Here is my command:
GWAS trait: PASS.Bipolar_Disorder_AL…
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Hello,
I have defined annotation features - promoter and enhancer lists. I used them with Hi-C data trying to find enhancer-promoter pairs. My Hi-C data ranges were 10kb in size. Later I repeated t…
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Dear all,
The proposal has been made to obsolete
* GO:0009373 regulation of transcription by pheromones
* * GO:0045996 negative regulation of transcription by pheromones
* * GO:0009371 positi…
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Hello, I am trying to export to the BedGraph File.
However, I only receive tag cluster file not divided into two strands.
This is what I did
```
> trk humanS_cluster |> CTSSnormalizedTpmGR(…
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Hi,
thanks for the great software!
I encountered a new question about the enrichment results when using different combinations of LD scores.
Since the LD score of each category is independent(s…
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Hello,
Thank you for creating minfi!
It is super useful!
Is there an hg38 version of an Illumina Human Methylation Array 450K annotation package?
Like this one: IlluminaHumanMethylation450kanno.…