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I am new to Philosopher, and tried to run PeptideProphet on a linux cluster using a database generated with Philosopher and pepXML output from an MSFragger search, but got the following error that I'm…
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Dear all,
I am trying to analyze tims tof pro data with Open search and I ran into this error described below.
INFO[01:07:14] Executing Filter v3.4.13
INFO[01:07:14] Processi…
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Hi,
I'm trying to search an MS3-TMT file. Error is below. I generated the mzml using MSConvert but perhaps incorrectly. Also using runstart IC. MS2-TMT files processed fine.
Thanks,
Matt
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Hello! I am generating mzTab files from sirius, that have MTD, SMH and SML initials , but utf8 encoding only recognizes the SML. Any suggestions? This is my script:
```
import pandas as pd
import…
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Probably the setup is the issue?
![image](https://user-images.githubusercontent.com/21457/129866310-2fe98500-8ee1-44d2-9d4b-5a65b73318f4.png)
It says it is creating a report though:
```
[0:2…
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Hi, here is the log of an error I am getting with Peptide Shaker. Any ideas? Thank you!
Carla
Java version: 14.0.1.
1714 script command tokens
(C) 2009 Jmol Development
Jmol Version: 12.0.43 …
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hi,
thank you very much for putting together this package to enable reading propriatary Oribtrap RAW files into R. i'm trying to read and process the RAW files at
https://www.ebi.ac.uk/pride/ar…
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Process 'MSFragger' finished, exit code: 1
Process returned non-zero exit code, stopping
~~~~~~~~~~~~~~~~~~~~
Cancelling 31 remaining tasks
08:43:59 ERROR: Error writing log to file
java.nio.chan…
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Hi,
I want to run an open search on 48 raw files acquired on a QE. All samples were run with the same LC-MS method right after each other on the same instrument.
I was using the shell script you…
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Dear Developers,
Finally I run my fragpipe-workflow (LFQ-MBR) completely from a script (that was developed with a smaller DB and it run successfully).
Using now my large MetaproteomicsDB I end u…