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Hello,
What is the way to create custom sidechainnet (and proteinnet) alike dataset entries from a list of .cif files?
How to create sidechainnet formatted dataset with 1000 custom .cif proteins fro…
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I have tried to perform the command
babel -ac 1bxr.pdb 1bxr.pdb to generate CONECT records in the pdb.
But every time I have a segmentation fault. Tried on several machines with Debian Linux and O…
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Hello, I am using PDB2PQR on the web server at https://server.poissonboltzmann.org/. I uploaded the PDB file 5YCK obtained from the RCSB databank (https://www.rcsb.org/structure/5YCK). However, when I…
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tail -f /data01/alphafold/run_logs/rcsb_pdb_1H15.fasta.full_dbs.log
I0426 11:34:48.328172 139772739196992 run_docker.py:113] Mounting /data01/alphafold/database/mgnify -> /mnt/mgnify_database_path
I…
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I ran into the case of [1AO9](http://www.rcsb.org/pdb/explore.do?structureId=1ao9), which contains a `DOP` residue that is not resolved in the `ATOM` records. This residue does not appear in a machin…
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Hi McMenemy!
Your example looks very good and I was trying to use your viztein tool, I essentially copy&pasted your example, but it only showed "example component" on my page, would it be convenien…
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How can I show specific residues, such as space fill, size theme uniform, and colour theme cartoons, after selection?
import React, { useEffect, useRef, useMemo } from 'react';
import …
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Most of RCSB resources are crystal structures.
With PyMol, it is possible to isolate a particular chain (delete the rest) and export the result. It's convenient for preparing inputs for docking/aff…
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When working in a Mol* session, I can keep saving state files and they will contain the correct state definitions. However, if I then load one of these state files into the working session, Mol* will …
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Consider adding support to check for existing chemical component ids and their nomenclature in the wwPDB [chemical component dictionary](https://www.wwpdb.org/data/ccd).
With more depositions with…