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Unexpectedly, my package `ChemoSpec` broke where it uses `seriation::hmap`. The error can be seen via:
```
data("Wood")
hmap(Wood)
```
I don't see anything in the release notes for the curre…
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``` r
library (pkgstats)
packageVersion ("pkgstats")
#> [1] '0.0.3.51'
u 6 8 4 41 2 8
#> tidyr utils
#> …
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I am using the genefu package to subtype my breast cancer RNA-seq data to predict subtypes. For that purpose, I use pam50.robust data. However, I realized that the centroid values changed. I tried it …
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I installed heatmaply and ggplot2 with devtools::install_github.
However, heatmaply does not generate ggplot object even when plot_method = "ggplot"
is given as an argument.
Here are the commands…
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This is a problem with all of the GO annotation packages I have tried, and I suspect that the root issue is in topGO. But, I'm not sure.
`org.Sc.sgd.db` is listed as one of the accepted org package…
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Hi, thank you for this great tool.
It was working well with my data until a few days ago, but now even when I run the codes in your vignettes for a test, the following message shows up.
- Codes …
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Hi,
I run drop demo with the command: "snakemake --nolock --cores 1". But I got an error like this:
```
Load packages
Tue Jun 28 10:02:06 2022: Start counting the split reads ...
Tue Jun 28 1…
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Hello,
Thanks for writing such a fantastic package. Gone are the days of manually extracting vegan objects and forcing them into ggplot!!
I'm following the heatmaps vignette and having this issue …
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@Jegelewicz @dustymc @lkvoong This collection caught my eye given all of the work that has gone into the new and improved ChronometricAge extension to DwC on the IPT. https://tools.gbif.org/dwca-vali…
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I am using Seurat FindMarkers with MAST as follows;
`FindMarkers(aml, ident.1 = "10", test.use = "MAST")`
and I get an error, `Error: $ operator is invalid for atomic vectors`
I am using a …