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Currently CSV2DB allows the database backend to be set to either sqlite, mysql or postgres. There is currently no option in either `conf.py` or `pipeline.ini` to allow the user to set the database ba…
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Hi,
I am trying to run CellChat on a single nuclei RNAseq dataset from the turquoise killifish. I basically followed the steps given in the [previous version of CellChat,](https://github.com/sqjin/…
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Hi,
Really delighted with this incredible set of software now with single cell capacities. I wanted to ask about whether any attempts have been made to adapt the STARsolo pipeline for cell surface …
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We know that R is not good at dealing with sparse matrices. In order to make the methods turn fast, currently me and @alex-d13 are working with reduced single cell datasets (< 20k cells), from which t…
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Would it be possible to add an option to run VDJ analysis using the IMGT database as the reference (as opposed to vdj_GRCh38_alts_ensembl-5.0.0, the current reference)? 10X provides a build script fo…
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Hi Mathieu,
Bullseye is wonderful for single-cell RNAseq C-to-U site detection and the results conclude control coverage, control ratio, dart coverage, and dart ratio. **How to get each C-to-U site …
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Many thanks to @edg1983 and @ewels for the cellranger module https://github.com/ewels/MultiQC/pull/1821. Cellranger count is most commonly ran with GEX data only, but can also support feature barcode …
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Hello,
I would like to do MultiLabel Text-Classification
My code:
```
model = OpenAI(api_key)
prompter = Prompter('multilabel_classification.jinja')
pipe = Pipeline(prom…
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**Project:**
Characterizing the transcriptome of individual cells is fundamental to understanding complex biological systems. Recent developments in single cell RNA sequencing (scRNA-seq) technologies…
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Hello,
it's a really impressive method. And I want to use this method in my project. But I have multical 10X single cell samples, and I ran one by one following your 'Instructions for Manual Impleme…