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I'm unable to build using docker:
```
erik@copito [01:10:50 PM] [~/blobtools] [master]
-> % docker build -t drl/blobtools .
```
This crashes and burns:
```
Collecting package metadata (r…
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Any plans on making KEMET a legit python package that can be installed via pip (from pypi)? I see that the `setup.py` is non-standard. Converting the current code in the setup.py to a separate script …
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Spin out for #392 looking at rules for accepting species names, currently the ``taxdump.py`` code merges species groups into a single "species" entry.
Using taxdmp_2021-10-01 there is only one case…
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I saw this before but forgot to report, if the meta file is named `meta.yml` the recipe won't be built. but it will look like the CI passed.
the other option would be to have the build system sup…
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This situation applies in an HPC environment and there are multiple concurrent jobs running which are calling ETE3 independently and there has either been an update to the NCBI database or momentary c…
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Hi all,
Sorry if this question is silly.
I have several fasta files from some kegg orthogoly of my interest which I extracted from prodigal and hmmsearch result. For example, the nifH, that is the…
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Hi,
I saw other people also run into this problem. I cannot build a database and the problem seems to be the domain bacteria.
Thousands of warnings like that
Warning: taxonomy id doesn't exists …
koppk updated
9 months ago
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I just cloned the most recent version of StrainPro yesterday. I'm running Strainpro-build on the example "ecoli.fa" file with freshly downloaded taxdump files. The build job has been running for ~15 h…
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For StrainPro v0.9.2, it appears that when calling `StrainPro-build`, that executable requires `StrainPro-rep` to be located at `bin/StrainPro-rep` relative to the user's current working directory. T…
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#### Description
Issue /CSCfi/metadata-submitter-frontend/issues/418 requires an API to call, however NCBI does not provide an easy way to query their API and for this we need to construct our ow…