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The figure produced by plot_tree is missing many family-level labels although most of the taxa contain family-level assignment. Also the placement of the labels were off for several taxa.
![tree](h…
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I was wondering if it makes sense / is straight-forward to use blobtools2 to decontaminate de novo transcriptomes. If so, are there any recommendations that differ from the approaches used for genomes…
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Hi
I am trying to install singlem in our local system with conda environment. I am having two issues
1. with singlem bin
conda activate singlem
cd bin
export PATH=$PWD:$PATH
singlem -h
It work…
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for charcoal, there is some interesting logic encoded [here](https://github.com/dib-lab/charcoal/blob/c7fd19205e92461bb5ee09735e05d107e35a1779/charcoal/utils.py#L198) in utils.py --
```
taxlis…
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hi rcedgar,
Thanks for your powerful software.
I have a batch of aa seqs and RdRp already verfied. I try to use palm_annot and palmDB by blastp to annotation the seqs.
I also used your palmsca…
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### Is your feature related to a problem?
I often want to find the sequence that was used for a particular assignment. I especially want to be able to do this when using the workflow with students to…
irc47 updated
3 weeks ago
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**Gracilaria vermiculophylla has not been reported in the Sourthern Hemisphere. This location is not regarded in the last published distribution range**
Last published distribution range: Mendoza-…
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I was seeking a similar kind of "one number measure" to unicity distance, but for _taxonomic_ incoherency, and I decided to try out k-mer Shannon entropy - [link](https://en.wikipedia.org/wiki/Entropy…
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Hi,
I'm having an issue running the split_libraries_fastq.py for R1. I have input all possible combinations of
--rev_comp_barcode and --rev_comp_mapping_barcodes and I either get the error that t…
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Dear Temesgen,
I need some clarification on the output of slimm species-level classification "_profile.tsv". For a test sample I get the following output:
```
taxa_level taxa_id linage abun…