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Hi,
Thanks for your great work! I have two questions here for you. I was trying to run a survival prediction using PANTHER + LinerEMB (Step2B) on my own dataset based on extracted UNI features. How…
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Hello!
I'm building a ctat_genome_library in preparation to run STAR-Fusion, but I came across an error when I ran "prep_genome_lib.pl". It ran into an issue when trying to run "index_pfam_domain_…
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Hi,
I am trying to compute survival plots for a specific set of genes expressed in a specific samples in TCGA.
What I am doing is
```
listSamples
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I was wondering if there are plans to expand the clinical data in the PanCan TCGA studies with data that is present in the Provisional TCGA data. For example, the Provisional TCGA BRCA has 140 clinica…
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Hello,
I am trying to download or use SpliceSeq from https://bioinformatics.mdanderson.org/public-software/spliceseq/installation/ but it takes me to http://projects.insilico.us.com/lander?template=A…
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If I want to analyze the RNAseq data of TCGA, which data should be used? count or tpm or fpkm?
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I have samples from TCGA-BRCA. How do we identify the batch info from the sample ID?
my ids look as follows.
```
TCGA-LL-A73Y-01A-11R-A33A-13
TCGA-AO-A03U-01B-21R-A10I-13
TCGA-E9-A1NH-01A-11R-A14…
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Related #1
「プロトコルをまとめる」とは
「TCGAを使うときにかかってくる制約がある（DBGAPの利用規約参照（HIPAA））ので、awsubでやるなら、これこれこういうふうにやればいいよ」というのを言語化し、記述する行為。
（実績を付記する必要がある）
- awsubを実際に使って大量のがんゲノム解析（eg. TCGAのデータ）をする。
- AWS…
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but same query in oncoprint does:
See: https://www.cbioportal.org/results/oncoprint?genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=ov_tcga_pub_gistic&Action=Submit&genetic_profile_ids_P…
inodb updated
9 months ago
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