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TCGA pancreatic cancer study is missing allele counts. Can you please look into why this might be?
The MAFs I find in Firehose seem to have them, at least this one:
http://gdac.broadinstitute.org/ru…
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这是我最终理想化的想要得到的数据形式。
对TCGA，nonPCAWG，PCAWG/ICGC这三个数据来源的数据，各种癌症类型的cox回…
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Related #1
「プロトコルをまとめる」とは
「TCGAを使うときにかかってくる制約がある（DBGAPの利用規約参照（HIPAA））ので、awsubでやるなら、これこれこういうふうにやればいいよ」というのを言語化し、記述する行為。
（実績を付記する必要がある）
- awsubを実際に使って大量のがんゲノム解析（eg. TCGAのデータ）をする。
- AWS…
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Come up with user friendly/intuitive behavior for the Related/TCGA tab. Currently any selection of an attribute in the Related/TCGA tab will automatically selected the TCGA collection, if no TCGA coll…
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Dear authors, I am now reading your paper "Pan-cancer evaluation of regulated cell death to predict overall survival and immune checkpoint inhibitor response", it is an amazing and impressive work and…
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Hi Jakob and co-authors,
Thank you for your contribution for creating a model to segment MR structures! My lab is very excited to try it out.
I was curious about the data that you used from Ima…
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Can I combine the read count that both from TCGA and GTEx, and then perform DEG analysis directly without remove batch effect in your provided count data? Or I can only perform DEG analysis via DESeq2…
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Following curl responds empty. Which is what [explains](https://beta.cbioportal.org/patient?studyId=coadread_tcga_pan_can_atlas_2018&caseId=TCGA-F5-6864)
curl 'https://beta.cbioportal.org/api/struc…