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I'm running the basic hdWGCNA pipeline using a set of large Seurat 5 objects that were generated using BP Cells to allow storage of large expression matrices on disk rather than in memory.
When ru…
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Since Seurat v5.1 the default image class (also for non-Visium HD data) is [`VisiumV2`](https://search.r-project.org/CRAN/refmans/Seurat/html/VisiumV2-class.html). Unfortunately, the resulting object …
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Hello,
I get the following error after following the manual for a single-cell dataset I'm working with.
data_obj = featureConstruct(normalized,method = "SelfProjection")
Error in cor(fpkm_for_clu…
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**Error**
Hello! Thank you for creating such an awesome package!
I used seurat assay 5 to perform hdWGCNA analysis. All function worked well until ModuleEigengenes function. When I run ModuleEigeng…
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## Scope
The [proposed](https://github.com/FATelarico/ctv-network) CRAN Task View contains a list of packages that can be used for dealing with networks (also known as _relational data_ and _graphs_)…
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```
The downloaded source packages are in
‘/tmp/RtmpjdbjHB/downloaded_packages’
✔ checking for file ‘/tmp/RtmpjdbjHB/remotescfd390643de/BMILAB-scNPF-742ec64/DESCRIPTION’ ...
─ preparing ‘scNPF’…
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Hi I am trying to run findModules(), but I keep getting this error. Have tried to change parameters with
pyWGCNA_adata.findModules(kwargs_function={'cutreeHybrid': {'deepSplit': 0, 'pamRespectsDen…
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Hey people,
I will also try to put down what I remember of Amrits conversation with us.
- Look at differential network analysis. This can be used to see the differences in networks between the…
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When running ModuleEigengenes() with a seurat.v5 object I got an error:
```
Error in `LayerData
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**Describe the bug**
When I use MetaspotsByGroups to treat my seurat_obj, It reports error. Looks like follow:
```
Not validating Seurat objectsNot validating Seurat objectsNot validating Seurat …