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XAVIER on Biowulf is pointing to an older version (2.0). Requires write permissions to pull new release
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I tried to run the pipeline by pulling new Singularity images, but got errors of "Failed to pull singularity image":
` ERROR ~ Error executing process > 'DNA_workflow:Fastp (4)'
Caused by:
…
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```
[Wed Jan 3 11:39:49 2024]
rule rna_report:
input: /data/Ziegelbauer_lab/circRNADetection/tmp_kopardevn/RENEE_testing_240103/DEG_ALL/RSEM.genes.expected_counts.all_samples.reformatted.tsv, …
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### Description of the bug
Error in trimming. Nextflow can't find the library file : yusa_library.csv. Looks like this is getting passed through correctly as an input but not copying to the working…
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Want to configure the server context git sub module instead of pip packaging
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```
if ( params.split_fastq ){ …
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Hi,
I'm trying to test the pipeline using the test files but all files on https://github.com/OpenOmics/chrom-seek/tree/main/.tests are empty except the the peakcall.tsv and the contrasts.tsv. Can y…
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Error reported by Krithika & Ying.
`snakemake.log`
```
Error executing rule rnaseq_multiqc on cluster (jobid: 324, external: 12899399, jobscript: /vf/users/CCRCCDI/analysis/ccrtegs4/renee_2023112…
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Would it be possible to add the option to exclude data from raw that is all zeros (this happens when recording is longer than the task) and would be useful for self-paced task recordings. something l…
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Ensure wrapper script has conveniences for biowulf users but still runs on other platforms too.