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### Description of the enhancement or error report
Currently Kernel or BoundaryCondition are designed for an individual variable which is indicated by their `variable` parameter. In radiation transpo…
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Now that the has_primary_input and has_primary_output dust has settled, we need to go back and look at the pathways that we have manually created to change the metabolites appropriately. Another thing…
ukemi updated
5 years ago
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While testing a benchmark for TESPy, we encountered a problem of non-convergence. The error messages from the TESPy are like follows:
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I ran pyJac on a mechanism with 52 species; http://combustion.berkeley.edu/gri_mech/version30/files30/grimech30.dat
and look at the generated code. The only mention of OpenMP in the generated code…
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Many SSAs (Gibson-Bruck, partial propensity methods, RSSA...) require more reaction network info than is easily available from the type generated by the @reaction_network macro. It would be great if t…
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I was reading the documentations today after the latest update and noticed that `g` could be a sparse matrix like:
```julia
A = zeros(2,4)
A[1,1] = 1
A[1,4] = 1
A[2,4] = 1
sparse(A)
# Make `g…
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@isaacsas and @ChrisRackauckas Moving some stuff over to a separate conversation.
I plan to update the `ReactionStruct` to something like this:
```julia
struct ReactionStruct
substrates::Vec…
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I have a TSV file training_abstracts.tsv when I use the function:
‘def test1():
with open('F:\\small paper\\ner\\data_file\\training_abstracts.tsv', 'r', encoding='utf-8') as f1:
line =…
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Hi there!
I am having an issue where callbacks are being missed and I don't really understand why. I have tweaked the `abstol` and `interp_points parameters` in my problem but I get very inconsiste…
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https://arxiv.org/abs/1603.00856
**At a glance**: Related to virtual screening #45. Similar to #52, provides an alternative molecular fingerprint for chemical compounds. This paper uses graph convo…