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Hi,
Thank you for building the adapter to access DepMap. I am wondering where I can find the following input data:
DepMapNodeType.GENE.value: "data/v0.5/genes/gene_all.csv",
DepMapNodeType.COMP…
axh24 updated
8 months ago
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Continuous integration failing on[ 04-drug_dosage_and_curves.py](https://github.com/PNNL-CompBio/coderdata/blob/main/build/depmap/04-drug_dosage_and_curves.py) script. This script passes "CCLE" to [04…
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I'm not sure if this is the right place to report this - I'd rather put this first on some forum, but since SBT does not have any mailing list for users, I'm forced to put it here.
I'm randomly getti…
ghik updated
4 months ago
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Currently Open Targets Platform contains data from the 2023Q2 depmap release. For the upcoming platform release there's a newer version released at the end of last year: 2023Q4.
**Tasks**:
- [x…
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There is cell line data in the HCMI, the MPNST data and the 'cell_line' data. Can we rename this DepMap? This is currently where i'm pulling the data from....
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### Description of feature
e.g. depmap is outdated.
We should ideally also provide a way to versionize it better
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Continuous integration is failing in the Depmap build step of Cell Line the CI pipeline. It is exiting with exit code 137 which appears to be a memory issue.
I previously had a similar issue with b…
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Here is the updated list they provided Dec 15 2023.
We are generally interested to find gene pairs where:
- there is a strong Cell Painting ORF pos or neg correlation (column E: ORF_similarity_ab…
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How do I download? I get the following error when downloading with BiocManager::install("depmap") & a similar error if I download from GitHub directly with BiocManager::install("uclouvain-cbio/depmap"…
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From: Anne Carpenter
Date: Fri, Dec 1, 2023 at 2:44 PM
Hi Ardigen/Ksilink,
Using this attached plot from Ardigen of the top 25 most anti-correlated pairs, I saw MYT1-RNF41.
So, I found someon…