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`DissimilarityMatrix.filter` is very similar in concept to `numpy.take` as it accepts a list of IDs to "take" from the matrix (and ideally also a boolean vector). In turn, `DissimilarityMatrix.filter`…
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```
Faster distance matrix, for distances that are a 'metric'
See t/SBG/Network.t
Measure the difference.
Rathern than (N) * (N-1) / 2
Do: put everything into a list, one item per box.
start with fi…
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First, I would like to say thank you for the PyMS software! I think it is incredibly robust, efficient and user-friendly! I am enjoying using it very much.
Currently, I am struggling to get the Pairw…
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I'm trying to use `U,s,V = OptSpace().fit_transform(A_)` but there are no defaults for `OptSpace` and there is also no `fit_transform` method.
How can I use your `DEICODE` Python package without us…
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Hi there!
Coming from using the [RapidFuzz](https://github.com/maxbachmann/RapidFuzz) library in Python, a feature I liked to use was weighted distances. [RapidFuzz Docs](https://maxbachmann.github…
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### 目標
- 新增Location的Mapper/測試
- 在新增Location時，使用Geolocation把地址字串轉換成Location Entity物件(詳細資料型態請參考`LeafAPI::Entity::Location`)。
- (已經做完的Trip是使用DistanceMatrix API，把起點/終點/方法的變數轉換成Trip Entity物件，比較一下應該會比較好寫…
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I'm thinking about adding in [Lovell's Proportionality](http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004075) metric into `skbio.stats.composition`.
Basically, it's an awesom…
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I've noticed in your solution that you have fixed point A and n-1, however this is not what we are looking for, only first point given as the input has to be fixed as a starting point, 2nd, 3rd, etc w…
zetta updated
6 years ago
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I am pretty new to using these tools, so I hope I am not an inconvenience.
I am having problems with processing of an outputfile of joined reads, processed with the fastq-join from ea-utils. When r…
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Currently, the `dereplicate-mags` action needs a distance matrix to use when dereplicating, but there is no action available in the environment to generate one from `SampleData[MAGs]`. Thus everything…