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Hi,
I followed the wiki to create the GTDB-database and I noticed in the final step there might be some errors:
find OPERA-MS-DB/ -type f -name '*.fna.gz' > OPERA-MS-DB/genomes_list.tx
It wil…
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I'm trying to run snippy-multi for a few assembled genomes.
I've generated a tab file (input.tab) as follows:
isolate12 /msa/12_PROKKA_06152021.fna
isolate2 /msa/2_PROKKA_06162021.fna
isolate2…
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so @bluegenes did a nice thing with orthodb (see [comment here](https://github.com/dib-lab/charcoal/issues/30#issuecomment-631142093)), and ran charcoal on 10 euk and 10 bac from orthodb.
first, it…
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**Introductory Information:**
SDL3 is the upcoming major release of [SDL](https://github.com/libsdl-org/SDL) that breaks the ABI for the first time in over 10 years, in favor of dramatically improv…
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I have assembled a single haplotype and aligned it to the hg38 reference genome. Then, I used SVision to call structural variants (SVs). When I called SVs using each haplotype separately, both haploty…
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I get the following error when building kraken2 database:
`rsync: link_stat "/all/GCF/037/914/965/GCF_037914965.1_ASM3791496v1/GCF_037914965.1_ASM3791496v1_genomic.fna.gz" (in genomes) failed: No suc…
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### Describe the bug
How do I fix this?
### Reproducing steps
I was modding fnas 1, th…
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I wonder if it is possible to make results reproducible using abricate.
Different results were sometimes produced when the same command was run several times.
```
abricate --threads 80 --db megar…
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We discussed this briefly in person on Monday 14 October, but to put this in writing:
The details differ but most if not all of the ANI methods have some threshold below which they find no meaningf…
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Hi,
I met an unexpected error when run the strain cluster:
(/common/yinlab/xinpeng/conda_env/operams) [xinpeng@login1.swan new]$ cat /lustre/work/yinlab/xinpeng/final_course_project/glacier_alga…