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Hi,
Following the installation instructions, `make test` fails with an Error (from `runBESST`). Is the test correctly designed?
To reproduce:
- Ubuntu 18.04.3 LTS
- python version 2.7.15+
-…
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Question1:
I use this command 'minia-v3.2.1-bin-Linux/bin/minia -in trim_cat.fq -kmer-size 101 -out-dir minia_assembly -max-memory 2048000' to assembly. But there was some error as followed in pictur…
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#include
#include
using namespace std;
int main(int argc, char* argv[]) {
string inqfile="/prednet/data03/OutputByRun03/pipeline_test/180420_MN00392_0030_A000H2F5H2/polishedfastq/H001271_…
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Hello all,
I encountered what might be a bug during a simple test of dbgh5 on my computer. (Ubuntu 18.04, 8GB of RAM, last commit of gatb-core)
When working on a small test file (1000 reads), db…
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Can I use multiple -1 -2 --mp-1 --mp-2 flags to load multiple input files or do I have to cat all files together (that's what I used previously). If they have to be concatenated, can both --mp-12 and …
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(2019-12-24 19:56:17) Minia assembling at k=21 min_abundance=2
(2019-12-24 19:56:17) Execution of 'minia/minia'. Command line:
/NGStools/gatb-minia-pipeline/tools/memused /NGStools/gatb-minia-…
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It might be helpful to add the following links
- Tutorial on nano (https://datacarpentry.org/wrangling-genomics/)
- Note to install Bcalm 2 as well via conda (https://github.com/GATB/bcalm#installat…
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There was an error that i could not solve it. Could you help me? Thank you very much!
Best wishes,
Shirley
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Hi!
I have a couple of older Illumina datasets (both PE and MP) split across multiple insert sizes and libraries.
Is it possible to pass them as a single argument, as I think that'd make life ea…
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When ZLIB is not installed on your system, CMake promises it will compile without ZLIB support:
-- Could NOT find ZLIB (missing: ZLIB_DIR)
-- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUD…