dib-lab dib_rotation issues

dib-lab / dib_rotation

Metagenomics DIB-lab rotation project

https://dib-lab.github.io/dib_rotation/

BSD 3-Clause "New" or "Revised" License

2 stars 8 forks source link

issues

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[WIP] added python=3.6 to kofamscan and created new khmer env

#80 ccbaumler opened 5 months ago
0
[MRG] Update the sourmash doc with gather and tax

#79 ccbaumler opened 5 months ago
0
maybe also add other unix tutorials

#78 ctb opened 5 months ago
0
[MRG] Include unix tutorial doc in background reading

#77 ccbaumler closed 5 months ago
1
MRG: minor updates to formatting and content

#76 ctb closed 5 months ago
0
[MRG]clarify and explain codes in "Assembling a Nbhd"

#75 yuenchingshen closed 7 months ago
1
[MRG]clarify and explain codes in "Find and download the data"

#74 yuenchingshen closed 7 months ago
0
[MRG]clarify and explain codes in "Bin Completion with Spacegraphcats"

#73 yuenchingshen closed 7 months ago
0
[MRG] additional info on using vim

#72 yuenchingshen closed 7 months ago
0
broken link in "Bin Completion with Spacegraphcats"

#71 yuenchingshen closed 7 months ago
0
Sourmash lca gather not a command anymore

#70 nkavaler1 closed 5 months ago
1
[MRG]solved scp broken link issues on the "Starting a Work Session" Page #54

#69 yuenchingshen closed 7 months ago
0
[MRG] corrected t- denotes mentioned on the "Starting a Work Session" Page #54 and corrected broken link Issues

#68 yuenchingshen closed 7 months ago
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[MRG]different user name reminder

#67 yuenchingshen closed 7 months ago
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[MRG]Farm Account Setup

#66 yuenchingshen closed 7 months ago
0
Linking farm notes to dib_rotation

#65 nkavaler1 opened 9 months ago
0
The 00a_unix.md file is not visible in the dib-lab metagenomics rotation project

#64 bscruz closed 5 months ago
0
[MRG] fixed scp on Quality Control page - issue #60

#63 nkavaler1 closed 7 months ago
1
[MRG] fixed typos on background reading

#62 nkavaler1 closed 7 months ago
0
Sourmash lca gather not a command anymore

#61 nkavaler1 opened 9 months ago
1
Quality Control scp

#60 nkavaler1 closed 7 months ago
0
Config file for farm

#59 nkavaler1 opened 9 months ago
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Python 3.6 needed to install khmer

#58 nkavaler1 opened 9 months ago
0
[WIP] Removing from scp cmd

#57 ccbaumler closed 9 months ago
0
issue on "rotation project Find and download the data" page

#56 yuenchingshen closed 9 months ago
0
Metagenomics Project: "Find and download the data" SCP code

#55 nkavaler1 closed 7 months ago
4
Issues on the "Starting a Work Session" Page

#54 nkavaler1 closed 7 months ago
1
Typos on background reading page

#53 nkavaler1 closed 7 months ago
0
Farm user name many be different than email

#52 ccbaumler opened 11 months ago
0
[WIP] Farm Account Setup

#51 nkavaler1 opened 11 months ago
3
KEGG Decoder Recursion Error

#50 evanjh19 opened 1 year ago
0
10 Annotating amino acid sequences

#49 ccbaumler opened 2 years ago
3
Conda init [y/n] and -h, --help command

#48 ccbaumler opened 2 years ago
1
[MRG] a 2022 update - fix many misc things!

#47 ctb closed 2 years ago
5
08 Bin Completion with Spacegraphcats: Sourmash compute -> sourmash sketch

#46 ccbaumler closed 2 years ago
0
08 Bin Completion with Spacegraphcats: Mamba > Snakemake?

#45 ccbaumler closed 2 years ago
0
07_taxonomic_discovery_with_sourmash compute > sketch

#44 ccbaumler closed 2 years ago
0
07_taxonomic_discovery_with_sourmash

#43 ccbaumler closed 2 years ago
0
06_Quality_Control-Python Version Issue

#42 ccbaumler closed 2 years ago
0
Broken Links

#41 ccbaumler closed 2 years ago
1
[WIP] Add "how to contribute" doc

#40 hehouts closed 3 years ago
1
add instructions for updating this site

#39 bluegenes closed 3 years ago
1
change default branch name to `main` or `latest`

#38 ctb opened 3 years ago
0
add kofamscan installation fix

#37 bluegenes closed 3 years ago
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update 2020_rotation_project to 2021_rotation_project, or something else that won't go out of date each year

#36 taylorreiter opened 3 years ago
0
Make sure CTRL-C appears somewhere in the rotation project documentation, preferably early on

#35 taylorreiter opened 3 years ago
0
replace . with ./ in tutorials

#34 taylorreiter closed 2 years ago
0
Add conda install kofamscan

#33 bryshalm closed 3 years ago
1
Update 04b_starting_a_work_session.md

#32 bluegenes closed 3 years ago
0
srun session does not work

#31 clmattson-zz opened 3 years ago
1