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I'm using getorganelle to extract mitochondrial genomes from insects. I first do an assembly using SPAdes (because we use that output for other downstream tasks anyway), and then I run get_organelle_f…
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Hi Great tool thanks for maintaining it.
i have a question that relates to the lack of mitochondrial genome encoded genes and their corresponding ontologies.
In the following code:
```
hgnc
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/hyochoi/ELViS
Confirm the following by editing ea…
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Hello, I know this might seem as a stupid and simple question, but I need to ask. I want to calculate iHS. for that, I have vcf files that were generated by GATK. I have used both haploid and diploid …
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Hi, I assembled the genome of allotetraploid species using hifiasm with size of ~3.7gb. I used the PacBio HiFi reads in Merqury for kmer analysis of genome estimation of our allotetraploid species. I …
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I encountered the following error when I test example data. Is there any solution to this error? Thanks.
[PEM-Q] primerChrom: chr15
[PEM-Q] primer_start: 61986633
[PEM-Q] primer_end: 61986652
[P…
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Hi,
I am currently learning to use MitoHPC to analyze WGS data. After successfully setting up the environment and testing it according to the tutorial, the script did not perform the analysis or prod…
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Dear all,
I have been having the following issue when installing panX. I followed the steps as in the site and used miniconda as indicated.
`Traceback (most recent call last):
File "./panX.py…
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Thank you for the wonderful tool! When I want to make my own GRN, get error. My network can't download ref_genome so
I manual download https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.fa…
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Hi, I want to produce a vcf file (for phylogenetic analysis) for 15 whole genome, same-species assemblies. I am following the step-by-step pipeline documented under the heading "Yeast Genome" in Min…