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In Stingray, we build documentation from a bunch of rst files and a number of notebooks. It usually works quite well, but today I'm having errors like the ones in the build below:
https://github.co…
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Do you have any recommendations for speeding up the CAIC normalisation for high resolution matrices?
I have called the CNVs and am supplying the seg.bed file along with the abs.bed and .matrix file…
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I am trying to create a custom track for the WashU EpiGenome browser (instructions here: http://washugb.blogspot.com/2012/09/generate-tabix-files-from-bigwig-files.html), so I am using a bedgraph file…
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not global -- not spam users.
Not sure related to rendering as I tried to also post a comment of simple "Thank you!" and received `Language "so" is not one of your supported languages ['en']!` b…
lshep updated
10 months ago
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Dear Prof. Wang,
I notice some annotation use "chr1" while others use '1' to represent chromosome. Is there any rule to determine how to select the style?
Here is example for "chr1"
```
==> …
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Hi,
Not really an Issue. I was wondering if you have at hand a solution to articulate Manhattan plot data on pyGenomeTracks
Thanks
diego
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Hello!
To detect ASD-related tandem repeat loci in my data, I'm refering to Trost et al. (2020). While I run an outlier analysis in EHdn, I have some questions.
1. I knew that depth-normalized c…
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First weekly progress update of my project (description of my project plan)
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Hi Han,
I hope you are doing well. I am running the following command for the wald test after successfully running the single score test. However, I am getting the following error (see below). My b…
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Dear all,
I wanted to use BGLR to estimate the genome-wide variance explained of a trait by SNPs and DNA methylation . A colleague and I noticed that BGLR estimates substantial SNP heritability or …