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Dear Samtools team, do you support VCFs exported from QIAGEN CLC genomics workbench? QIAGEN CLC genomics workbench is able to represent complex overlapping variants in recommended `reference overlap` …
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A few variants successfully annotate when pointed to the public GN (https://www.genomenexus.org/) but are failing when pointing to the Genie GN (https://genie.genomenexus.org/). The variants are passe…
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Some of our error messages (across the variantValidator tool set not just the core) are not as informative as they could be. For example user errors in using typo'd genomic sequence IDs for validation…
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Hi!
I miss an option to report all sites in VCF outupt, even the ones without genomic variants.
That would allow me to flag potentially non-informative sites, e.g. with low read depth. Application…
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Hello, I would like to introduce that I have developed a beta version of a graph genome browser for human genomics.
The name of the browser is "MoMIG" (Maple in Japanese): Modular Multi-scale Integra…
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Hi there, thanks for this great tool!
About the demonstration of gwaslab, I have one little question about gwas analysis.
Certain gwas results may represent sproadic signals across whole genome, l…
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Variant page feedback points from EMD (from discussion with Carlos):
- [x] Ensembl link at the top of page: is it possible to take the user directly to the variant page instead of the search result…
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Hi, I got following error message:
`02:20:12 [WARN] Variant at chr7:148807387 has invalid alternative characters. This record will be ignored.`
My vcf file contains following lines:
```
chr7…
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### Description
This excerpt, as well as others in the article Mamba: Linear-Time Sequence Modeling with Selective State Spaces, have rendering errors
### (Optional:) Please add any files, screensho…
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**Background**:
* cBioPortal: [cBioPortal](https://github.com/cBioPortal/GSoC/issues/www.cbioportal.org) is an open-source platform for cancer genomics data analysis and visualization. It provides a…