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## Expected Behavior
Hi, BFD database is so huge that I am looking for a solution to compress it. Could you provide the compressed version of BFD database, that is, ca3m database? Or can you show me …
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:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki).
I am attempting to create a hh-suite database from a directory containing many .a3m files. So far I am c…
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Hello.
I pulled the latest Parafold changes and created a new environment with the suggested installation steps. Next I ran the following command to use Alphafold.
```
(parafold)[ParallelFold]$…
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Hello everyone,
I have a question about the file after `cat make_msa.stderr`
`WARNING: Maximum number 65535 of sequences exceeded in file /home/../hhblists/tooo_.1e-30.a3m`
If you have the sam…
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Hi, me and @diegozea are using HH-suite3, v 3.2.0, commit d335e62 on Ubuntu 16.04.5 LTS.
When using hhmakemodel.py with a .hhr coming from hhsearch, it throws an error :
> python3 hhmakemodel.py …
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Hi,
We have installed Agnostos-wf and in our first attempt to analyze our metagenomic data we got the error bellow (in bold) after running 'db_creation' workflow
Used command line:
_snakem…
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Hi! I installed the conda environment according to the content in the READMD, and then wrote a script to infer the protein structure. The content of the script is as follows. After submitting the scri…
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Thank you for the code release!
I have a question about performance using precomputed MSAs (with MMseqs2) vs on-the-fly MSA computation with jackhmmer. I am comparing performance between (i) passin…
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I've been trying to set up Openfold to test it out this week. It's been somewhat of a struggle but I am sooo close right now.
Everything is installed and no errors along the way.
But now this, .…
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I'm trying to test RF2NA on a restriction enzyme (PDBID 3e42) however whenever I run the MSA generation step I got an error message:
22:32:35.465 ERROR: could not open file '/RF2NA/bfd/bfd_metaclu…